Index

A

apply() (cbmos.events.CellDivisionEvent method) (cbmos.events.Event method) (cbmos.events.PickRandomCellToDivideEvent method)

C

CBModel (class in cbmos.cbmodel) cbmos module cbmos.cbmodel module cbmos.cell module cbmos.events module cbmos.force_functions module cbmos.solvers module cbmos.solvers.adams_bashforth module

cbmos.solvers.euler_backward module cbmos.solvers.euler_forward module cbmos.solvers.geshgorin module cbmos.solvers.heun module cbmos.solvers.midpoint module cbmos.utils module Cell (class in cbmos.cell) CellDivisionEvent (class in cbmos.events) Cubic (class in cbmos.force_functions)

D

derive() (cbmos.force_functions.Cubic method) (cbmos.force_functions.Gls method) (cbmos.force_functions.HardCore method) (cbmos.force_functions.Hertz method) (cbmos.force_functions.LennardJones method) (cbmos.force_functions.Linear method) (cbmos.force_functions.LinearExponential method) (cbmos.force_functions.LinearLogarithmic method) (cbmos.force_functions.Logarithmic method) (cbmos.force_functions.Morse method) (cbmos.force_functions.PiecewisePolynomial method)

E

estimate_eigenvalues() (in module cbmos.solvers.geshgorin)

Event (class in cbmos.events)

G

generate_cartesian_coordinates() (in module cbmos.utils) generate_hcp_coordinates() (in module cbmos.utils)

generate_honeycomb_coordinates() (in module cbmos.utils) Gls (class in cbmos.force_functions)

H

HardCore (class in cbmos.force_functions)

Hertz (class in cbmos.force_functions)

J

jacobian() (cbmos.cbmodel.CBModel method)

L

LennardJones (class in cbmos.force_functions) Linear (class in cbmos.force_functions)

LinearExponential (class in cbmos.force_functions) LinearLogarithmic (class in cbmos.force_functions) Logarithmic (class in cbmos.force_functions)

M

module cbmos cbmos.cbmodel cbmos.cell cbmos.events cbmos.force_functions cbmos.solvers cbmos.solvers.adams_bashforth cbmos.solvers.euler_backward cbmos.solvers.euler_forward cbmos.solvers.geshgorin cbmos.solvers.heun cbmos.solvers.midpoint cbmos.utils

Morse (class in cbmos.force_functions)

P

PickRandomCellToDivideEvent (class in cbmos.events) PiecewisePolynomial (class in cbmos.force_functions)

plot_2d_population() (in module cbmos.utils) ProliferatingCell (class in cbmos.cell)

Q

queue_event() (cbmos.cbmodel.CBModel method)

S

setup_locally_compressed_monolayer() (in module cbmos.utils) setup_locally_compressed_spheroid() (in module cbmos.utils) simulate() (cbmos.cbmodel.CBModel method) solve_ivp() (in module cbmos.solvers.adams_bashforth) (in module cbmos.solvers.euler_backward) (in module cbmos.solvers.euler_forward) (in module cbmos.solvers.heun) (in module cbmos.solvers.midpoint)